Sure, if you ignore the 'afterburner' settings entirely and just use the 'module fitting' settings instead
tell evepilot that the module is just an "active module", and then set up the rule so that it's active at 100%-100%, and the bot will turn it on any time it is turned off, period
although if you have sound turned on, you might want to adjust the capacitor settings so it stops trying to turn it on if your capacitor is below 30%, otherwise any time you get neuted down to 0% aura will spam your ears with "the capacitor has insufficient charge"
here is how my hunter bot has his afterburner (mid slot 1) set up:
i.imgur.com/ZnCS7IT.png
i.imgur.com/2ZXPVtc.png
you can use the same rule for your shield hardeners as well, although I'd be hesitant... find out if you can actually recharge your capacitor up to 25% from 0% with your afterburner AND shield hardeners on, otherwise it might get stuck at 0% and never regen back up, since the cap regen speed slows down drastically below 25%